Mansoor, Saqi: search on Z-Library

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1

Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms

Mazein, Alexander, Ostaszewski, Marek, Kuperstein, Inna, Watterson, Steven, Le Novère, Nicolas, Lefaudeux, Diane, De Meulder, Bertrand, Pellet, Johann, Balaur, Irina, Saqi, Mansoor, Nogueira, Maria Ma

Journal:

npj Systems Biology and Applications

Year:

2018

Language:

english

File:

PDF, 4.52 MB

english, 2018

2

Network-Based Data Integration for Selecting Candidate Virulence Associated Proteins in the Cereal Infecting Fungus Fusarium graminearum

Lysenko, Artem, Urban, Martin, Bennett, Laura, Tsoka, Sophia, Janowska-Sejda, Elzbieta, Rawlings, Chris J., Hammond-Kosack, Kim E., Saqi, Mansoor, Lee, Yin-Won

Journal:

Year:

2013

Language:

english

File:

PDF, 595 KB

english, 2013

3

On single and multiple models of protein families for the detection of remote sequence relationships

James A Casbon, Mansoor AS Saqi

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 293 KB

english, 2006

4

Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation

Robert B Russell, Mansoor A.S Saqi, Roger A Sayle, Paul A Bates, Michael J.E Sternberg

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 469 KB

english, 1997

5

Large scale molecular dynamics simulation of native and mutant dihydropteroate synthase–sulphanilamide complexes suggests the molecular basis for dihydropteroate synthase drug resistance

Giordanetto, Fabrizio, Fowler, Philip W., Saqi, Mansoor, Coveney, Peter V.

Journal:

Philosophical Transactions Mathematical Physical & Engineering Sciences

Year:

2005

Language:

english

File:

PDF, 436 KB

english, 2005

6

Assessing the functional coherence of modules found in multiple-evidence networks fromArabidopsis

Artem Lysenko, Michael Defoin-Platel, Keywan Hassani-Pak, Jan Taubert, Charlie Hodgman, Christopher J Rawlings, Mansoor Saqi

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.24 MB

english, 2011

7

A structural census of metabolic networks for E. coli

Mansoor A.S Saqi, Michael J.E Sternberg

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 263 KB

english, 2001

8

Free energy changes associated with amino acid substitution in proteins

Saqi, Mansoor A.S., Goodfellow, Julia M.

Journal:

Protein Engineering Design and Selection

Year:

1990

Language:

english

File:

PDF, 1.19 MB

english, 1990

9

Transcriptome and Metabolite Profiling of the Infection Cycle of Zymoseptoria tritici on Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition

Rudd, Jason J., Kanyuka, Kostya, Hassani-Pak, Keywan, Derbyshire, Mark, Andongabo, Ambrose, Devonshire, Jean, Lysenko, Artem, Saqi, Mansoor, Desai, Nalini M., Powers, Stephen J., Hooper, Juliet, Ambro

Journal:

PLANT PHYSIOLOGY

Year:

2015

Language:

english

File:

PDF, 3.65 MB

english, 2015

10

Convergence Behavior in Free Energy Simulations

Saqi, Mansoor A. S., Goodfellow, Julia M.

Journal:

Molecular Simulation

Year:

1991

Language:

english

File:

PDF, 419 KB

english, 1991

11

Clustering ofPseudomonas aeruginosatranscriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles

Richard D Waite, Alberto Paccanaro, Anastasia Papakonstantinopoulou, Jacob M Hurst, Mansoor Saqi, Eddie Littler, Michael A Curtis

Journal:

Year:

2006

Language:

english

File:

PDF, 692 KB

english, 2006

12

A simple method to generate non-trivial alternate alignments of protein sequences

Mansoor A.S. Saqi, Michael J.E. Sternberg

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 564 KB

english, 1991

13

A computational framework for complex disease stratification from multiple large-scale datasets

De Meulder, Bertrand, Lefaudeux, Diane, Bansal, Aruna T., Mazein, Alexander, Chaiboonchoe, Amphun, Ahmed, Hassan, Balaur, Irina, Saqi, Mansoor, Pellet, Johann, Ballereau, Stéphane, Lemonnier, Nathanaë

Journal:

BMC Systems Biology

Year:

2018

Language:

english

File:

PDF, 1.59 MB

english, 2018

14

Representing and querying disease networks using graph databases

Lysenko, Artem, Roznovăţ, Irina A., Saqi, Mansoor, Mazein, Alexander, Rawlings, Christopher J, Auffray, Charles

Journal:

Year:

2016

Language:

english

File:

PDF, 2.74 MB

english, 2016

15

EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer

Balaur, Irina, Saqi, Mansoor, Barat, Ana, Lysenko, Artem, Mazein, Alexander, Rawlings, Christopher J., Ruskin, Heather J., Auffray, Charles

Journal:

Journal of Computational Biology

Year:

2016

Language:

english

File:

PDF, 518 KB

english, 2016

16

An analysis of structural instances of low complexity sequence segments

Journal:

Protein Engineering Design and Selection

Year:

1995

Language:

english

File:

PDF, 432 KB

english, 1995

17

Towards an automatic method of predicting protein stucture by homology: an evaluation of suboptimal sequence alignments

Saqi, Mansoor A.S., Bates, Paul A., Sternberg, Michael J.E.

Journal:

Protein Engineering Design and Selection

Year:

1992

Language:

english

File:

PDF, 587 KB

english, 1992

18

An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching

Saqi, Mansoor, Dobson, Richard Jb., Kraben, Preben, Hodgson, David A., Wild, David L.

Journal:

Journal of Integrative Bioinformatics

Year:

2009

Language:

english

File:

PDF, 325 KB

english, 2009

19

Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks

Balaur, Irina, Mazein, Alexander, Saqi, Mansoor, Lysenko, Artem, Rawlings, Christopher J., Auffray, Charles

Journal:

Year:

2016

Language:

english

File:

PDF, 152 KB

english, 2016

20

Global sequence properties for superfamily prediction: a machine learning approach

Dobson, Richard Jb., Munroe, Patricia B, Caulfield, Mark J, Saqi, Mansoor

Journal:

Journal of Integrative Bioinformatics

Year:

2009

Language:

english

File:

PDF, 548 KB

english, 2009

21

DSC: public domain protein secondary structure prediction

King, Ross D., Saqi, Mansoor, Sayle, Roger, Sternberg, Michael J.E.

Journal:

Year:

1997

Language:

english

File:

PDF, 195 KB

english, 1997

22

A high level interface to SCOP and ASTRAL implemented in Python

James A Casbon, Gavin E Crooks, Mansoor AS Saqi

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 297 KB

english, 2006

23

Expectations from Structural Genomics Revisited

Mansoor A. S. Saqi,Dr David L. Wild

Journal:

American Journal of PharmacoGenomics

Year:

2005

Language:

english

File:

PDF, 117 KB

english, 2005

24

PdbAlign, PdbDist and DistAlign: Tools to aid in relating sequence variability to structure

Sayle, Roger, Mansoor, Saqi, Weir, Malcolm, Lyall, Andrew

Journal:

Year:

1995

Language:

english

File:

PDF, 1.20 MB

english, 1995

25

STON: exploring biological pathways using the SBGN standard and graph databases

Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.32 MB

english, 2016

26

Type 2âlow asthma phenotypes by integration of sputum transcriptomics and serum proteomics

Kermani, Nazanin Zounemat, Saqi, Mansoor, Agapow, Paul, Pavlidis, Stelios, Kuo, Chihhsi, Tan, Kai Sen, Mumby, Sharon, Sun, Kai, Loza, Matthew, Baribaud, Frederic, Sousa, Ana R, Riley, John, Wheelock,

Journal:

Year:

2020

File:

PDF, 4.77 MB

2020

27

Predicting deleterious nsSNPs: an analysis of sequence and structural attributes

Richard J Dobson, Patricia B Munroe, Mark J Caulfield, Mansoor AS Saqi

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 299 KB

english, 2006

28

Analysis of superfamily specific profile-profile recognition accuracy

James A Casbon, Mansoor AS Saqi

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 268 KB

english, 2004

29

Navigating the disease landscape: knowledge representations for contextualizing molecular signatures

Saqi, Mansoor, Lysenko, Artem, Guo, Yi-Ke, Tsunoda, Tatsuhiko, Auffray, Charles

Journal:

Briefings in Bioinformatics

Year:

2019

Language:

english

File:

PDF, 8.35 MB

english, 2019

30

Protein interaction networks associated with cardiovascular disease and cancer: exploring the effect of bias on shared network properties

Dobson, Richard J.B., Munroe, Patricia B., Caulfield, Mark J., Saqi, Mansoor A.S.

Journal:

International Journal of Data Mining and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 938 KB

english, 2014

31

Amino acid sequence of the α subunit and computer modelling of the α and β subunits of echicetin from the venom of Echis carinatus (saw-scaled viper)

POLGÁR, János, MAGNENAT, Edith M., PEITSCH, Manuel C., WELLS, Timothy N. C., SAQI, Mansoor S. A., CLEMETSON, Kenneth J.

Journal:

Biochemical Journal

Year:

1997

Language:

english

File:

PDF, 604 KB

english, 1997

32

Use of parallel processing in the study of protein. Ligand binding

Julia M. Goodfellow, Douglas M. Jones, Roman A. Laskowski, David S. Moss, Mansoor Saqi, Narmada Thanki, Richard Westlake

Journal:

Journal of Computational Chemistry

Year:

1990

Language:

english

File:

PDF, 735 KB

english, 1990

33

AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations

Michael Defoin-Platel, Matthew M Hindle, Artem Lysenko, Stephen J Powers, Dimah Z Habash, Christopher J Rawlings, Mansoor Saqi

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 399 KB

english, 2011

34

Discovering Study-Specific Gene Regulatory Networks

Bo, Valeria, Curtis, Tanya, Lysenko, Artem, Saqi, Mansoor, Swift, Stephen, Tucker, Allan, de la Fuente, Alberto

Journal:

Year:

2014

Language:

english

File:

PDF, 1.49 MB

english, 2014

35

Functional diversity within protein superfamilies

Casbon, James, Saqi, Mansoor

Journal:

Journal of Integrative Bioinformatics

Year:

2006

File:

PDF, 110 KB

2006

36

Navigating the disease landscape: knowledge representations for contextualizing molecular signatures

Saqi, Mansoor, Lysenko, Artem, Guo, Yi-Ke, Tsunoda, Tatsuhiko, Auffray, Charles

Journal:

Briefings in Bioinformatics

Year:

2019

File:

PDF, 8.35 MB

2019

37

Evaluation of the sequence template method for protein structure prediction: Discrimination of the (βα)8-barrel fold

Stephen D. Pickett, Mansoor A.S. Saqi, Michael J.E. Sternberg

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 2.48 MB

english, 1992

38

Identification of sequence motifs from a set of porteins with related function

Saqi, Mansoor A.S., Sternberg, Michael J.E.

Journal:

Protein Engineering Design and Selection

Year:

1994

Language:

english

File:

PDF, 3.73 MB

english, 1994

39

Delineation of the arginine- and tetrahydrobiopterin-binding sites of neuronal nitric oxide synthase

BOYHAN, Angela, SMITH, Derek, CHARLES, Ian G., SAQI, Mansoor, LOWE, Peter N.

Journal:

Biochemical Journal

Year:

1997

Language:

english

File:

PDF, 712 KB

english, 1997

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